Everytime I launch missionary for the first time when I boot up my computer, it gives me a connection timed out when trying to connect to the server. I have to shut missionary down, re-copy my pak2 file(causes an error after this for some reason) then relaunch missionary and it works fine. Any idea on how to fix this, my missionary version is 30...

Two possible reasons.
I've lower the challenge ping down a bit to try and keep more high pingers out.
I know this was an issue for you before. The challenge ping is set at 300 right now.
I'll rasie it up to 350 and see if that makes a difference for you.

Other possible problem is you said your using verson 30.
Is that version 151130 or 152130.
Do to some changes in CI, the lowest version it will allow to connect is
152.125